Preliminary Publication List

This is a preliminary list of publications that acknowledged gCore services. It is incomplete and might contain errors. We will verify each publication and update it.  Updated Mar 4, 2025.

You can acknowledge the services of the gCore either in methods or in the acknowledgements section:  "We thank the Stem Cell Genomics Core at the Sanford Stem Cell Institute for providing sequencing  (or microscopy) services." Phrasing can be modified, but it is essential to mention the bolded part.

1. Bakhoum, Mathieu F., Jasmine H. Francis, Albert Agustinus, Ethan M. Earlie, Melody Di Bona, David H. Abramson, Mercedes Duran, et al. 2021. “Loss of Polycomb Repressive Complex 1 Activity and Chromosomal Instability Drive Uveal Melanoma Progression.” Nature Communications 12 (1): 5402. https://doi.org/10.1038/s41467-021-25529-z.

2. Campillo-Gimenez, Laure, Michael Li, Elsa Molina, and Peter B. Ernst. 2022. “Adenosine Receptor Signaling Regulates Effector T Cell Activation through the Limitation of Aerobic Glucose Metabolism.” The Journal of Immunology 208 (1_Supplement): 165.01–165.01. https://doi.org/10.4049/jimmunol.208.supp.165.01.

3. Cheng, Ee-Chun, Dongwan Kang, Zhong Wang, and Haifan Lin. 2014. “PIWI Proteins Are Dispensable for Mouse Somatic Development and Reprogramming of Fibroblasts into Pluripotent Stem Cells.” PloS One 9 (9): e97821. https://doi.org/10.1371/journal.pone.0097821.

4. Diaz, Miranda D., Elaine Tran, Martin Spang, Raymond Wang, Roberto Gaetani, Colin G. Luo, Rebecca Braden, et al. 2021. “Injectable Myocardial Matrix Hydrogel Mitigates Negative Left Ventricular Remodeling in a Chronic Myocardial Infarction Model.” JACC. Basic to Translational Science 6 (4): 350–61. https://doi.org/10.1016/j.jacbts.2021.01.003.

5. Huggins, I. J. 2016. “Wnt Signaling and Developmental Logic in Human Stem Cell Populations.” https://search.proquest.com/openview/d661beb98433692815cc7d249c2bf21f/1?pq-origsite=gscholar&cbl=18750.

6. Lake, Blue B., Rizi Ai, Gwendolyn E. Kaeser, Neeraj S. Salathia, Yun C. Yung, Rui Liu, Andre Wildberg, et al. 2016. “Neuronal Subtypes and Diversity Revealed by Single-Nucleus RNA Sequencing of the Human Brain.” Science (New York, N.Y.) 352 (6293): 1586–90. https://doi.org/10.1126/science.aaf1204.

7. Ma, Tiantai, Erica S. Xiong, Rea M. Lardelli, and Jens Lykke-Andersen. 2023. “The 3’ Exonuclease TOE1 Selectively Processes snRNAs through Recognition of Sm Complex Assembly and 5' Cap Trimethylation.” bioRxivorg. https://doi.org/10.1101/2023.08.15.553431.

8. ———. 2024. “Sm Complex Assembly and 5’ Cap Trimethylation Promote Selective Processing of snRNAs by the 3' Exonuclease TOE1.” Proceedings of the National Academy of Sciences of the United States of America 121 (3): e2315259121. https://doi.org/10.1073/pnas.2315259121.

9. Medina-Munoz, Hugo C., Eric Kofman, Pratibha Jagannatha, Evan A. Boyle, Tao Yu, Krysten L. Jones, Jasmine R. Mueller, et al. 2024. “Expanded Palette of RNA Base Editors for Comprehensive RBP-RNA Interactome Studies.” Nature Communications 15 (1): 875. https://doi.org/10.1038/s41467-024-45009-4.

10. Nguyen-Ngoc, Kim-Vy, Yesl Jun, Somesh Sai, R. Hugh F. Bender, Vira Kravets, Han Zhu, Christopher J. Hatch, et al. 2022. “Engineered Vasculature Induces Functional Maturation of Pluripotent Stem Cell-Derived Islet Organoids.” bioRxiv. https://doi.org/10.1101/2022.10.28.513298.

11. Parreau, Simon, Elsa Molina, Stéphanie Dumonteil, Radjiv Goulabchand, Thomas Naves, Melanie C. Bois, Hussein Akil, et al. 2023. “Use of High-Plex Data Provides Novel Insights into the Temporal Artery Processes of Giant Cell Arteritis.” Frontiers in Immunology 14 (September):1237986. https://doi.org/10.3389/fimmu.2023.1237986.

12. Stiller, Josefin, Rute R. da Fonseca, Michael E. Alfaro, Brant C. Faircloth, Nerida G. Wilson, and Greg W. Rouse. 2021. “Using Ultraconserved Elements to Track the Influence of Sea-Level Change on Leafy Seadragon Populations.” Molecular Ecology 30 (6): 1364–80. https://doi.org/10.1111/mec.15744.

13. Thangaraj, Jaya Lakshmi, Michael Coffey, Edith Lopez, and Dan S. Kaufman. 2024. “Disruption of TGF-β Signaling Pathway Is Required to Mediate Effective Killing of Hepatocellular Carcinoma by Human iPSC-Derived NK Cells.” Cell Stem Cell 31 (9): 1327–43.e5. https://doi.org/10.1016/j.stem.2024.06.009.